Publications 2023

A differentiable , physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, Chaopeng Shen.
Biogeosciences (2023). DOI:10.5194/bg-20-2671-2023.
A Practitioner 's Guide to Bayesian Inference in Pharmacometrics using Pumas
Mohamed Tarek, Jose Storopoli, Casey Davis, Chris Elrod, Julius Krumbiegel, Chris Rackauckas, Vijay Ivaturi.
arXiv (2023). DOI:10.48550/arXiv.2304.04752.
Advancing Odor Classification Models Enhanced by Scientific Machine Learning and Mechanistic Model : Probabilistic Weight Assignment for Odor Intensity Prediction and Uncertainty Analysis for Robust Fragrance Classification
Vinicius Santana, Erbet Costa, Carine Rebello, Ana Mafalda Ribeiro, Chris Rackauckas, Idelfonso Nogueira.
ChemRxiv (2023). DOI:10.26434/chemrxiv-2023-mtfrc.
Catalyst: Fast and flexible modeling of reaction networks
Torkel E. Loman, Yingbo Ma, Vasily Ilin, Shashi Gowda, Niklas Korsbo, Nikhil Yewale, Chris Rackauckas, Samuel A. Isaacson.
PLOS Computational Biology (2023). DOI:10.1371/journal.pcbi.1011530.
Differentiable modelling to unify machine learning and physical models for geosciences
Chaopeng Shen, Alison P. Appling, Pierre Gentine, Toshiyuki Bandai, Hoshin Gupta, Alexandre Tartakovsky, Marco Baity-Jesi, Fabrizio Fenicia, Daniel Kifer, Li Li, Xiaofeng Liu, Wei Ren, Yi Zheng, Ciaran J. Harman, Martyn Clark, Matthew Farthing, Dapeng Feng, Praveen Kumar, Doaa Aboelyazeed, Farshid Rahmani, Yalan Song, Hylke E. Beck, Tadd Bindas, Dipankar Dwivedi, Kuai Fang, Marvin Höge, Chris Rackauckas, Binayak Mohanty, Tirthankar Roy, Chonggang Xu, Kathryn Lawson.
Nature Reviews Earth \& Environment (2023). DOI:10.1038/s43017-023-00450-9.
Differentiating Metropolis - Hastings to Optimize Intractable Densities
Gaurav Arya, Ruben Seyer, Frank Schäfer, Kartik Chandra, Alexander K. Lew, Mathieu Huot, Vikash K. Mansinghka, Jonathan Ragan-Kelley, Christopher Rackauckas, Moritz Schauer.
arXiv (2023). DOI:10.48550/arXiv.2306.07961.
Efficient hybrid modeling and sorption model discovery for non-linear advection-diffusion-sorption systems: A systematic scientific machine learning approach
Vinicius V. Santana, Erbet Costa, Carine M. Rebello, Ana Mafalda Ribeiro, Christopher Rackauckas, Idelfonso B. R. Nogueira.
Chemical Engineering Science (2023). DOI:10.1016/j.ces.2023.119223.
Extending JumpProcess .jl for fast point process simulation with time-varying intensities
Guilherme Augusto Zagatti, Samuel A. Isaacson, Christopher Rackauckas, Vasily Ilin, See-Kiong Ng, Stéphane Bressan.
(2023). DOI:10.21105/jcon.00133.
Fifty Three Matrix Factorizations : A Systematic Approach
Alan Edelman, Sungwoo Jeong.
SIAM Journal on Matrix Analysis and Applications (2023). DOI:10.1137/21M1416035.
Forecasting virus outbreaks with social media data via neural ordinary differential equations
Matías Núñez, Nadia L. Barreiro, Rafael A. Barrio, Christopher Rackauckas.
Scientific Reports (2023). DOI:10.1038/s41598-023-37118-9.
Julia for biologists
Elisabeth Roesch, Joe G. Greener, Adam L. MacLean, Huda Nassar, Christopher Rackauckas, Timothy E. Holy, Michael P. H. Stumpf.
Nature Methods (2023). DOI:10.1038/s41592-023-01832-z.
Locally Regularized Neural Differential Equations : Some Black Boxes were meant to remain closed!
Avik Pal, Alan Edelman, Christopher Vincent Rackauckas.
PMLR (2023).
On the structure of the solutions to the matrix equation G ⁎ JG = J
Alan Edelman, Sungwoo Jeong.
Linear Algebra and its Applications (2023). DOI:10.1016/j.laa.2022.10.007.
Physics-enhanced deep surrogates for partial differential equations
Raphaël Pestourie, Youssef Mroueh, Chris Rackauckas, Payel Das, Steven G. Johnson.
Nature Machine Intelligence (2023). DOI:10.1038/s42256-023-00761-y.
Robust Parameter Estimation for Rational Ordinary Differential Equations
Oren Bassik, Yosef Berman, Soo Go, Hoon Hong, Ilia Ilmer, Alexey Ovchinnikov, Chris Rackauckas, Pedro Soto, Chee Yap.
(2023). DOI:10.1016/j.amc.2025.129638.
Robust Parameter Estimation for Rational Ordinary Differential Equations
Oren Bassik, Yosef Berman, Soo Go, Hoon Hong, Ilia Ilmer, Alexey Ovchinnikov, Chris Rackauckas, Pedro Soto, Chee Yap.
arXiv (2023). DOI:10.48550/arXiv.2303.02159.
Sum-of- Squares Bounds for Quantum Optimal Control
Flemming Holtorf, Frank Schäfer, Julian Arnold, Christopher Rackauckas, Alan Edelman.
(2023). DOI:10.1109/QCE57702.2023.10284.
The conditional DPP approach to random matrix distributions
Alan Edelman, Sungwoo Jeong.
arXiv (2023). DOI:10.48550/arXiv.2304.09319.